We gratefully acknowledge support from
the Simons Foundation and member institutions.


Authors and titles for recent submissions

[ total of 18 entries: 1-18 ]
[ showing up to 25 entries per page: fewer | more ]

Fri, 1 Mar 2024

[1]  arXiv:2402.19095 [pdf, ps, other]
Title: A Protein Structure Prediction Approach Leveraging Transformer and CNN Integration
Subjects: Biomolecules (q-bio.BM); Machine Learning (cs.LG)
[2]  arXiv:2402.18583 [pdf, other]
Title: Binding-Adaptive Diffusion Models for Structure-Based Drug Design
Comments: Accepted by AAAI 2024. Project: this https URL
Subjects: Biomolecules (q-bio.BM); Machine Learning (cs.LG)
[3]  arXiv:2402.19207 (cross-list from cond-mat.stat-mech) [pdf, other]
Title: Constrained hidden Markov models reveal further Hsp90 protein states
Subjects: Statistical Mechanics (cond-mat.stat-mech); Biomolecules (q-bio.BM)
[4]  arXiv:2402.17810 (cross-list from q-bio.QM) [pdf, other]
Title: BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task Tuning
Comments: 24 pages
Subjects: Quantitative Methods (q-bio.QM); Artificial Intelligence (cs.AI); Computational Engineering, Finance, and Science (cs.CE); Machine Learning (cs.LG); Biomolecules (q-bio.BM)

Thu, 29 Feb 2024

[5]  arXiv:2402.18396 [pdf, other]
Title: Deep Confident Steps to New Pockets: Strategies for Docking Generalization
Journal-ref: International Conference on Learning Representations 2024
Subjects: Biomolecules (q-bio.BM); Machine Learning (cs.LG)
[6]  arXiv:2402.17997 [pdf, ps, other]
Title: StaPep: an open-source tool for the structure prediction and feature extraction of hydrocarbon-stapled peptides
Comments: 26 pages, 6 figures
Subjects: Biomolecules (q-bio.BM)
[7]  arXiv:2402.18567 (cross-list from cs.LG) [pdf, other]
Title: Diffusion Language Models Are Versatile Protein Learners
Subjects: Machine Learning (cs.LG); Biomolecules (q-bio.BM)
[8]  arXiv:2402.17960 (cross-list from cs.CV) [pdf, other]
Title: Rapid hyperspectral photothermal mid-infrared spectroscopic imaging from sparse data for gynecologic cancer tissue subtyping
Subjects: Computer Vision and Pattern Recognition (cs.CV); Biomolecules (q-bio.BM); Quantitative Methods (q-bio.QM); Tissues and Organs (q-bio.TO)
[9]  arXiv:2402.17796 (cross-list from physics.bio-ph) [pdf, other]
Title: An Allosteric Model for the Influence of $\text{H}^+$ and $\text{CO}_2$ on Oxygen-Hemoglobin Binding
Subjects: Biological Physics (physics.bio-ph); Chemical Physics (physics.chem-ph); Biomolecules (q-bio.BM)

Wed, 28 Feb 2024

[10]  arXiv:2402.16854 [pdf, ps, other]
Title: Attention Based Molecule Generation via Hierarchical Variational Autoencoder
Subjects: Biomolecules (q-bio.BM); Machine Learning (cs.LG)
[11]  arXiv:2402.17179 (cross-list from cs.LG) [pdf, other]
Title: Dual-Space Optimization: Improved Molecule Sequence Design by Latent Prompt Transformer
Subjects: Machine Learning (cs.LG); Biomolecules (q-bio.BM)
[12]  arXiv:2402.17156 (cross-list from cs.LG) [pdf, other]
Title: TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation
Subjects: Machine Learning (cs.LG); Artificial Intelligence (cs.AI); Biomolecules (q-bio.BM)
[13]  arXiv:2402.16882 (cross-list from physics.chem-ph) [pdf, other]
Title: Substrate Scope Contrastive Learning: Repurposing Human Bias to Learn Atomic Representations
Subjects: Chemical Physics (physics.chem-ph); Artificial Intelligence (cs.AI); Machine Learning (cs.LG); Biomolecules (q-bio.BM)

Tue, 27 Feb 2024

[14]  arXiv:2402.16271 [pdf, ps, other]
Title: Rebuildable biochronometer: inferences and hypothesis on eukaryotic timing system
Authors: Ming-Jia Fu
Comments: 29 pages, 9 figures
Subjects: Biomolecules (q-bio.BM); Cell Behavior (q-bio.CB)
[15]  arXiv:2402.16445 (cross-list from cs.CE) [pdf, other]
Title: ProLLaMA: A Protein Large Language Model for Multi-Task Protein Language Processing
Subjects: Computational Engineering, Finance, and Science (cs.CE); Biomolecules (q-bio.BM)
[16]  arXiv:2402.15864 (cross-list from cs.LG) [pdf, other]
Title: Field-based Molecule Generation
Comments: 15 pages, 14 figures
Subjects: Machine Learning (cs.LG); Chemical Physics (physics.chem-ph); Biomolecules (q-bio.BM)

Mon, 26 Feb 2024

[17]  arXiv:2402.15181 (cross-list from q-bio.QM) [pdf, other]
Title: Substrate Prediction for RiPP Biosynthetic Enzymes via Masked Language Modeling and Transfer Learning
Subjects: Quantitative Methods (q-bio.QM); Biomolecules (q-bio.BM)
[18]  arXiv:2402.14887 (cross-list from q-bio.QM) [pdf, ps, other]
Title: Infer metabolic directions and magnitudes from moment differences of mass-weighted intensity distributions
Authors: Tuobang Li
Subjects: Quantitative Methods (q-bio.QM); Biomolecules (q-bio.BM); Cell Behavior (q-bio.CB); Molecular Networks (q-bio.MN); Subcellular Processes (q-bio.SC)
[ total of 18 entries: 1-18 ]
[ showing up to 25 entries per page: fewer | more ]

Disable MathJax (What is MathJax?)

Links to: arXiv, form interface, find, q-bio, new, 2403, contact, help  (Access key information)